Scaffold Ga0184604_10020908

Overview

Basic Information

• Taxon OID: 3300018000
• Scaffold ID: Ga0184604_10020908
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1548
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia caroliniensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034969	Metagenome / Metatranscriptome	173	Y
F036308	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184604_100209081	F036308	N/A	MKTTELFVEQTLTGFLVLAAGTAPFLSWEMIEKLPGEAKGGIDISSTAGAIGVAYLLGVIFDRFADTLLERFNRWNRLLFAIDLKEDHKALSPEDPFPEDRLQIEVIQKGDEAWEWMDYIRSRIRIERAMAAFIPAVTLSMELVVGLRDRPDIVRAVLAFVVAAYVAAFLVSQILERSSRRLPKTYDLHTDEDCRAARAKMSAMTEPSLWLGVFLFGLGLGLIAVSPAPARLGMAGILGMGTVLTAISVWAWWRTTGTFMQFLTDFRRWTTQK
Ga0184604_100209082	F034969	N/A	MLNKFSESTRAVSRRRFFGGAIVGAAAMLSASEPVWADDDNRPNDPFIVLLKGRYRPAPQLPDLGLSGVNLADTSYITTKIYPIFGVPGSRHSDDAIGRFYVSFSNPVCIYDLPHGAIAMQFAGSPVLQDIGFNTFVPFPDGKGGFFLEGTFELSILDATGIYKRFKGGHNHMVDRLHQLDAAGTKFDEFCFCNISSYQFP