Scaffold Ga0187891

Basic Information
Taxon OID	3300017996 Open in IMG/M
Scaffold ID	Ga0187891_1006815 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6753
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6753

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F025900	Metagenome	199	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F056263	Metagenome	137	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187891_100681512	F062380	GAGG	MPSDFNDSECNDFEKLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0187891_100681513	F044872	GGAGG	MNTGLLNSFASMVKGSILVADAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANHLFISDPSSEFGDCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVFAENSAAHPESTSDILGATLTESIQLLEAA
Ga0187891_100681514	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGTAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLAGPAKPKFRRVAPEVNHNSVRCIGLDKLKF
Ga0187891_10068156	F005296	AGGA	MPIWLLWLLPSYEAGFWSALIASKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQALVARWITTSLRWLANTRAMEYAILLGLKRVWPKGQTICTEVKLCL
Ga0187891_10068158	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTNLIH
Ga0187891_10068159	F025900	AGGAG	VPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEAPAEQINTDPFPDGEFGKEAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187891_1006815

Overview

Ecosystem & Geography

Associated Families

Sequences