Scaffold Ga0187891_1000155

Overview

Basic Information

• Taxon OID: 3300017996
• Scaffold ID: Ga0187891_1000155
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71144
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (68.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007700	Metagenome / Metatranscriptome	346	Y
F026585	Metagenome / Metatranscriptome	197	Y
F028635	Metagenome / Metatranscriptome	191	Y
F044615	Metagenome / Metatranscriptome	154	Y
F066447	Metagenome	126	Y
F072032	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187891_10001551	F026585	N/A	HTSVARELIRHLLEMDAHGQGHAHAWPGQISEKDVPGIETWLSDAEYSRPGCLITWYENDAINACFDEEAQHMGENGPCQPNVALPIHLDKPNEELDEEVRRVFDHAGAMLRSLASAAKIVELIRDLYDEYLREHRIESGLPVEPGAAGVREEQL
Ga0187891_100015513	F072032	AGG	MDSEKELLDAFNRVVHEDFPNPQRIACPGRDVLLKLAQQPADAQFAPLLAHIRQCAPCFDELKDLRCKAQKRYP
Ga0187891_100015516	F066447	N/A	MADRIVCSCVTCPKCGIWVVIRPQNQLAFSKEKSLAICPAEECGKEFEFEASETRVFEVPLPLFERRHFYRSELQEIEK
Ga0187891_100015518	F028635	AGG	MARAGRILAWWDRDVDRAGRPIRPDVRLAGHEIWEKACQRTHVLLADHGPAAELMENTVAQVSRYLDRTGAPLSTRKHGLLLVAFCRALCRYAAKSRRLELVGGSGELSKHTADNAWVRQVNARLDFEKIVRQLSERNAAVLTLRAAEYEWKEIAHLFGVSVAAVRNSFWREIERIRSGFRNDLP
Ga0187891_100015553	F044615	GAG	VPSRGREGSSTSTAVAEKVRSILASKRLTLYRASQHSVALYGLSSPYFLPHHLYYDLRSGSFRPSIHQIVALSRISGYRVADWLRVFGFDLEDITRLQIVLPSKRTIVLDNLLTDPNEWIPWLRNRPLGEPIPSITPIARLLELGSRKRIASVSQLDRHFIYAKVGVEDAFAFPELSPGSIVRVDPDVTADLVGRQNSGISDRLFLIEHSKGFCCCRIRILGGGVIVPFDNGLSYAQVELHCPQEAKLWGAVDLEFRPLLGGEEPKVPKDLARHWKPETLPALEDFGQLLKRTRTRMNLSIREVAAMSRIIAEILKDDRYTTSPSSLSDYELRNIPPRDFHKIITLCSTYGLRFESAMKRMGIDLAEAGTESMLDRYLSRAEPTVAAKRGELETVGAGFVEKLLGESQEIPLFLRDSLGYFAGSAHVSIDDFFWVGGDDDPLHPYLAEGLLVMVNRRRKTPFHLASKPWWQQPLYVILMREGVYLACCCSLENGLLVIHPYSRDFHRHAQYRLHQDAEVVGQVVAIMRRFP
Ga0187891_100015556	F007700	N/A	VTFVVSSPIIAGMTGLNLGLPTAWVVKCKKCGCTINCRAIDPQTEHSQPDKADPPPHDSVIVTCSCCWAAYRYSPAEIFKGAPGPSSNCYDRKKPNNQEERKSNAVLLIAASLIAAVRLNREEIKSSPVVHSKIADSIRLAEMIQARLRG