NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187822_10089569

Scaffold Ga0187822_10089569


Overview

Basic Information
Taxon OID3300017994 Open in IMG/M
Scaffold IDGa0187822_10089569 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005836Metagenome / Metatranscriptome389Y
F085525Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0187822_100895691F085525N/ASGRERFVVVGKPNAKMAPIAPALRGFLSAQGRADLSHPDASTWTAAEALSPIAWLTGQAIRLPGNPGN
Ga0187822_100895692F005836GGAVSAPRLRLGYPGRRARRTGLMLAGIVLVLTGLAGAAPAHGAGYVIAQLGPLTVRATALRPGPAGTLTAYIQVSTGGQPSDELDAAMGADGTAVAVYHQQVNVGEVSDLTGCGTEPPPPGVVDHWLHYGPLLVPGRSGAPSPPANATLTVQPDGTVPAGATLAITLYFADAGSVILRLPVSLG

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