Scaffold Ga0180435_10300695

Overview

Basic Information

• Taxon OID: 3300017992
• Scaffold ID: Ga0180435_10300695
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1324
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F008943	Metagenome / Metatranscriptome	325	Y
F010764	Metagenome / Metatranscriptome	299	Y
F037191	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180435_103006951	F000919	N/A	MRFRNIEFRWSKCDNKYELVKWNQNPNSETCYVIAFFDKDKEGYDIRTIGNRFFEDKDAWVVAKHAIEFLNEIFMIEQDELNYD
Ga0180435_103006953	F037191	GAGG	MTVAEMIEKLQQFPKDQEVQITDGFQYKFHFFEFQLSEDTDGSTFVDIGIGGYDYD
Ga0180435_103006955	F008943	GGAG	MKIDEFDWLMVLGIPILIIVAAGVITYDAQQQRALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0180435_103006956	F010764	GGAG	MIEVQKNYKITLTEQQAKELYEFLRGAKDCGHLSTDRDLVLVYHELKKL