Scaffold Ga0180434_10065929

Overview

Basic Information

• Taxon OID: 3300017991
• Scaffold ID: Ga0180434_10065929
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3138
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180434_100659292	F057324	AGGAG	MNITDDLVKDWLDKFDSNNEITLLTEIANNNICVSGMIDSILAYHVGEVEIAKDFYKNMWRSQS
Ga0180434_100659295	F044429	AGGAG	MSELPPMEDRMPGCEWVLVIKYGDPYTNTPLTTGFGPFKTKEDADDFRAQYYYDQIVIADIVPLNAVLPQSATELDIDFIPEGKVVDISSKINPHKH
Ga0180434_100659298	F020533	GGA	MNKCIVKGMFFMQDAILLEQDDLVKEFERKVRDKKIFFEVINPGQAESKGVDIEAMLEENNKLKSELRIFKDIVDHSITADARRGFNV