Scaffold Ga0180434_10027239

Overview

Basic Information

• Taxon OID: 3300017991
• Scaffold ID: Ga0180434_10027239
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5446
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008798	Metagenome / Metatranscriptome	328	Y
F032642	Metagenome	179	Y
F062721	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180434_1002723911	F032642	AGGAGG	MKQPRPEVWRQVGTSTSYAGLVGALEVLEHHARRLCHEQPDNYLLDGLRNILCSIDELEAAGRFGTVVTEKRETAMAKHPSGKNRDLTNPLESPTTHPPAATQPPEATEGQGASR
Ga0180434_100272393	F008798	AGGCGG	MATTMAEIYTRDELVALYPDGTVNVQVDDDVRPMTTDEWSEWIDGQVGQEKPADDPPA
Ga0180434_100272394	F062721	GGAG	MNLTNPPKALIAMVAMIVIAVLMVADSIANEAGTGMLGTIVGYAVGNGIAARGGKDVQPIIGKKADV