Scaffold Ga0180432_10242704

Overview

Basic Information

• Taxon OID: 3300017989
• Scaffold ID: Ga0180432_10242704
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1408
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040933	Metagenome	161	N
F045436	Metagenome	153	N
F059470	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180432_102427041	F059470	N/A	AMTDALTKIGSFLGIGADVWKDKGPKGSQNRPQRARASKPAQPQGQTPSSGSEPTSWLNLSDKDGFVNERGQQILEGVRLGEYTIDMIKAKYKINKRDFELLQEAAKH
Ga0180432_102427042	F040933	GAGG	MKEILNAHLAELVNNVENGETSPLEAWFEMKQIMDKAKWAMGLVEDAAINERESIGADEYKVEGFRIEVVQGRKMYSYKHIGRWKELQVQMKQVEQAAKTAADTGHLVVDHYGQEIEPAEMSFGKSYLKASVIR
Ga0180432_102427043	F045436	AGGAGG	MSVSKQIRAKASIKEYGLENPFVTGLLRRHGTNRIKLYHNDMTLRTFNNPQEFIQYGIGIVGARLESRREMANLVMNGKTVVVMVRKRTYLK