Scaffold Ga0180432_10039143

Overview

Basic Information

• Taxon OID: 3300017989
• Scaffold ID: Ga0180432_10039143
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4603
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029403	Metagenome	188	Y
F056535	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180432_100391432	F056535	GGAG	MRYGRNGKLYPLEMNQKTLFYLQMFLHQHKHNGLRDTDEKRRAYDHAMAQIRKGISKVYAHQTINGLKPPRSYTFRSRNDG
Ga0180432_100391439	F029403	GGAGG	MDPRQYKATISQNKAINKFLEEGYYVFTNVCEQGPIDIVVVNPKNGRAHFFDVKTSQGSRIVNGKSAGGGGAKLKAYQKELGVRLCVVEGEEVRIVEKRETITKRQKKENKNPFHKARKGINFLEEC