Scaffold Ga0180432_10034353

Overview

Basic Information

• Taxon OID: 3300017989
• Scaffold ID: Ga0180432_10034353
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5012
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041217	Metagenome / Metatranscriptome	160	N
F059018	Metagenome / Metatranscriptome	134	N
F070161	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180432_100343535	F041217	GGA	MAPDYSKLPFQLNWVQLVRQEFKGYGTEWKRGDVFDWQQRGIPWQDVMSLFNRGFLMQEAPTEDNQKKVVGDGLDELGPEELKVIVDNINAKVKLNTKTEREYNTKKCKASTITKKQRGHIRTWRNSPWSDWEQA
Ga0180432_100343537	F070161	GAGG	MSFNARDLLKLVQDFGETLTLRKVTTEGTYDADTGTLTGSATTDYSFTGYFYNLAEGTSDLTQTRKGRRACVIPAKGLKATPDDQDQILGNGDTVNITTVRTIFSGGQAVCYLCEVYD
Ga0180432_100343538	F059018	GAGG	MAVPKIKVSPALKKKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSLGKPTGRDPGSERGKALNNLVNDIKKTVEVGSPGGPLKEGIGIQADNYYFINRAPHAKKVDDNPKYRVLNKVIRQHGR