Scaffold Ga0181520_10002473

Overview

Basic Information

• Taxon OID: 3300017988
• Scaffold ID: Ga0181520_10002473
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34125
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181520_1000247319	F074173	AGGAGG	MTTDGNAEERRISGFESGAKPLDSVRFPHDPLGQNYPQHYPHVHETLGEPLSIRQVAGLIGCSAWTVRHRYLPQGLPHFRSGSAGKLVFYRNQVVQWILQQQRKQAGSPRTGLRPWGAKGGI
Ga0181520_1000247324	F082600	GGAG	MTTINTVRYAAITLLFLLAGCSHRVPEATIEVIDTSLSITPRAEKAALDAVQNQIGHMQRGDRLILIPITGDAQNDAGGRILRLSAPTERETYDTDLRRFQEQARKQFAAWTASLDLHQSRTDILGALDAARQELALLPDGMNRRLIVVSDFLEDDGTYNFVSAGSLAGPPRARELAAHLHEQHGFTLQGVPPCLGRLESSDFAPLSPQRKEAVQAFWTAYFAAGGESAEIEFDGTGILADTERGCFGGKR