Scaffold Ga0181520_10000592

Overview

Basic Information

• Taxon OID: 3300017988
• Scaffold ID: Ga0181520_10000592
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78988
• Total Scaffold Genes: 103
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (88.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037688	Metagenome	167	N
F039069	Metagenome / Metatranscriptome	164	N
F068740	Metagenome	124	N
F071177	Metagenome	122	N
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181520_1000059236	F039069	GGAG	MSTVLSRTPFGLMSLYPICVADNLKGISRRSSRWQVLEAFLLNSEGRAERVYEGRSGFVILMAIPGQPGTGAFYIYDEIHRDFFMVNFADQDNFHSSMFDYVVQFYDLGQYVELPKLTLVPKPASADNVDVASQSKRRSDRRFNRNRGPRVPHAVINAAGQTHMGLVTA
Ga0181520_1000059238	F037688	GGA	MFRRAILTLILSAAQAVVALPATAQLHHHHQITRSWVPGSRMPPRPMGNAGGQQVEWWLPLVEAIPTLLFLLGATPGIIANRKDIPNWKSYFWRGLFFGFFFFPIVLVLLYQVLKYEPAPITNQAQIRPPNIAVPQTARSDGGHAAADIPHPVSFEAESDQ
Ga0181520_1000059247	F068740	GAG	VDRAAILKVVEESYSKGCVTFTNEIKGKCQDPIEPLDKKGKYRLHPLIWTGILALGAAIGVILYFHFQS
Ga0181520_1000059253	F071177	GAG	LNTNSSAEKGAPALQPGASVEKVRKPRKGSAGQDAASCKFYIGDIKDGLPVMTKEVSEKDALIDCVRTQRPFMMVQLWTTASDIEDGRLIVVKAPVPSK
Ga0181520_1000059296	F082600	GGAGG	MNPCRSIPSTTFPALLLLLAACSHHTPEATVEVIDTSLSITPRAEKAAFDAVQDQIAHMQRGDMLVIIPITGDAANDIGGRILRLSAPTQRETYDTDLHRFQQQARKQYAAWVKSLDQHQSRTDLLGTLDVAQQELGLLPRGSNPRLIDASDFLEDDGTYRFVSARELADSVRARQLAVKLREQHGFAMQGVSLCLGRLESNDFARLSAARKDAVEAFWAAYLTTGGEPARIQFDGTGVLTNTLRGCAWGKR