Scaffold Ga0180431_10375312

Overview

Basic Information

• Taxon OID: 3300017987
• Scaffold ID: Ga0180431_10375312
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1017
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F022079	Metagenome	216	Y
F068594	Metagenome	124	Y
F069852	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180431_103753121	F022079	N/A	KGKKRTFYNFHELITYLDSFKMSFLPDNFSYTINDNNEGSK
Ga0180431_103753123	F005373	GGGGG	MNEGLENIKQIEGLEKKVLTLCDLLSQMCCNADEDTPAEYRTKHFRDAMNEAYEYLEEIGYLEGDK
Ga0180431_103753124	F068594	AGGGGG	MKEYIFWQEVKKYVREECVIKANSLDEALEIHNEGGADYKEVHCFDEEITDEGTDENRSN
Ga0180431_103753125	F069852	GAGG	MKIEVTRSDIQQGEAGNSQECAIALALQRHFKTNCAYVSGAIDQDEPIIKVDDKQFKVSEKDIYNVTTFIDLFDDYVFNEDVAIDETCIPRPFEFEIMEGK