NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10333321

Scaffold Ga0180431_10333321


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10333321 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1097
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009884Metagenome311N
F024296Metagenome206N
F026256Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0180431_103333212F009884GGAGGMERSMDNDEILNEIQRLLGFYPKLGEEILVCAVTLHFTAAPPSDKWLVLEQEIRRRLSQTYLEHR
Ga0180431_103333214F024296AGGAGVTDDQLIEELERAHNFRTYGGAGRTLQGDAASRLRELKLYIEQLKSDKHWLNEQLLEVRTDLQLAEAKNRERS
Ga0180431_103333215F026256N/AVLEAFPGASVKKRQEPTEKMIGFYKRLCRERSLEYDEQAFVDFDVCKAEIDRLKEMPRD

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