Scaffold Ga0180431_10171116

Overview

Basic Information

• Taxon OID: 3300017987
• Scaffold ID: Ga0180431_10171116
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1688
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054920	Metagenome	139	N
F062710	Metagenome	130	N
F095507	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180431_101711161	F095507	AGGAG	MDAKYRGFEIKYLGGGFKLYEGDSLKETHSCQDDTATKRYKSMQRIDAIHRHRRQEDDRSIERVDAQVRATRDMGV
Ga0180431_101711165	F062710	AGGAG	MASTVKVTFRISLPAQKEFKIVDKELWKQFKNDFVSALNEEDGKELIVSDYLEMYGLEPIDDSYSEDDPNRELECIEKIIDETGKSI
Ga0180431_101711166	F054920	N/A	TCDDDDLDKEYGMYYGNLEFDPLDIMQNTNGHTKMFHKENGEWRQL