Scaffold Ga0180431_10070482

Overview

Basic Information

• Taxon OID: 3300017987
• Scaffold ID: Ga0180431_10070482
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3019
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010828	Metagenome	298	N
F031053	Metagenome	183	Y
F047658	Metagenome	149	N
F101003	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180431_100704823	F010828	N/A	VKEKAAIDLLSDQELYELAQKLCNCPDDLIQEVVLVLLEMPDEKWEQINEGGYLRFYVVRTMMTMATSKRSSFSKLYNLHNHKKVDHEREEYDWEKEDDIALLETLMDELHWYDREVLKLWLEEGSYRKVGKKVDIPYKSIGNTVNKALDQLRDNYYAIHLERIIRERCRIPLD
Ga0180431_100704824	F101003	GAG	MLYILSALSASVAAYLWIEVFAIDLLLKSWLRLPDTYPLKPFDCRLCMSFWFGVVMCCFHEPEALLYVPLLSVFFERLMWRFEV
Ga0180431_100704826	F047658	N/A	MDKNEVLLFIAERLDQITMMEQGRYSGRITREEQRLYQEAWSYIDPKAKVCFTCGRSPQLMSAALLNFYQCQQDNALTENGDGDKATASTTPKRKRRKRGSQSK
Ga0180431_100704827	F031053	GGAGG	MKRSENYGLYITQNTYQMKWYCFNRDAANAYWNGEPCKKAVGDTPQEALSNYKNGKFTDK