Scaffold Ga0180431_10041373

Overview

Basic Information

• Taxon OID: 3300017987
• Scaffold ID: Ga0180431_10041373
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4280
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011718	Metagenome	288	Y
F088918	Metagenome / Metatranscriptome	109	N
F099146	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180431_100413731	F088918	N/A	MAYTRKIKLKITDEVYEKMQSRNQLWTREAFDQSEELAGQFKKNIIYMCEKRGIKIKDMLSWLTEMGLKFRQRRLYEWGDTHAIYPTLIEITFFSKFFELDPGVMISKDLREVDRLKGISKKNV
Ga0180431_100413732	F099146	N/A	MRASTYICTNIEEIERVKEENEKLNLPNPQPLPKPTYEESVGWFHIDDITRAYVRNINNTSVASLMFSDGTYMDIKMTSEVEEMLDVLFRNTL
Ga0180431_100413733	F011718	AGTAG	MNWILNNDIVKHLLKTYLPYLIAFLMGVIVAWKGCGDTSGKPVTTIIEKPVPTVEYVDRWRTDTVRFVSKRFITVTDTIYQDRIVSRLDTLFLVDTVSIVEAWLTEIAKYDTTIEQEAATLALSWQNYQNRSENLKITYTPKKVPLKWALGAHANAGLLSDFKASYVPLMGIGVQATVNRNYYKVDYGFNGDHYVGIGFGRNIISR