Scaffold Ga0180431

Basic Information
Taxon OID	3300017987 Open in IMG/M
Scaffold ID	Ga0180431_10002809 Open in IMG/M
Source Dataset Name	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017987 Open in IMG/M

Scaffold ID

Ga0180431_10002809 Open in IMG/M

Source Dataset Name

Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22935
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (7.69%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

22935

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (7.69%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.4166	Long. (^o)	-115.9166	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.4166

Long. (^o)

-115.9166

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F034539	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180431_1000280916	F034539	N/A	MLKKTIDTAKLKVKHVLGNHTALSTYPDSEDVIFELIRDYCGKVAKEIKFTNVSLQKKYNLTDERTNEIIMSLRRDKIIDISLSNAAYTTYEVIKNPYE
Ga0180431_100028092	F004479	N/A	MHSGKVLVGNSGDRVYLQDNKVIKEAGVYPIKFKQQMDWLANCSHPNFIKINPISDTSFEMNRYPTWYEKICDQPLIKSLDQLDRLIHIVNDFDGYGADVDTRSYLDKLETRTGYKYDGKFDAASKWGFVHGDLTVSNILYDKDFIFIDPRGTEEQSYYDHGKLMQSFTMKYESHMYNERNPKYLKFCREAEKIMYQWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHQLFDELEIKYTK
Ga0180431_100028098	F002407	N/A	METTINRIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTKDIFEADIDNPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGEYMASDFILENDDLQINLACTDPSLSFMEMSKEETDRAFGTESKMFEFDLLTTHVDKMKSLFNLDKEEDIFTLYIGERGINIKGTSYDATLCHSYDSSVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0180431_10002809

Overview

Ecosystem & Geography

Associated Families

Sequences