Scaffold Ga0181576_10131310

Overview

Basic Information

• Taxon OID: 3300017985
• Scaffold ID: Ga0181576_10131310
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → unclassified Rhodocyclaceae → Rhodocyclaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032444	Metagenome	180	Y
F047918	Metagenome	149	Y
F048298	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181576_101313102	F032444	AGGA	MFKTKLQYVSWNDSVPGSAKAADRKKTKLENQGYILISTQSGLFSGLMVYKNPNYKKGQ
Ga0181576_101313103	F047918	AGGA	MITIKKIEGNLKPFFTLIDDATNKTVGLVKGKNWLIKRQGWEYCNNQNFLTNHKNTGHYNKISKCWFFDNDIENFMEDANKRIEIQATLDHYKRLNNNQ
Ga0181576_101313106	F048298	AGG	MKKKYIFWKEVQKTVKEECIIEANSLDEATKLHNDGVTDYKEIDSFNEEIIDEGTIESEE