Scaffold Ga0181576_10021590

Overview

Basic Information

• Taxon OID: 3300017985
• Scaffold ID: Ga0181576_10021590
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4467
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F027835	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181576_1002159016	F008453	N/A	MSNYAVYRVFRDWNKQPKVLMDGLTREQAQTIVRNTPSKED
Ga0181576_100215902	F027835	N/A	MKTQQHIDALYERMKTAGGFECALIMAYMKADGGNAKLLEDAFKGTRFDLTPRPKYNHGVNVLRNAAYWSGNRDEYLNDDKTAYQIIDEYLQEND
Ga0181576_100215905	F018534	N/A	MALPTLTDFLNSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAFLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0181576_100215909	F020115	N/A	MMNNTMTHEQFEIFRQWAERVANTANDTDTHIRAVDFVHDIAGILANDEHFLPRL