Scaffold Ga0187782_10544386

Overview

Basic Information

• Taxon OID: 3300017975
• Scaffold ID: Ga0187782_10544386
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 890
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014773	Metagenome / Metatranscriptome	260	Y
F032398	Metagenome / Metatranscriptome	180	Y
F103584	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187782_105443861	F014773	N/A	LARRYGSSVVLLEHHPAPETGEGAETLDLVRSGAGGSLHWLRVWPTPEDNPRHAGLELWMAGHGYQIVGKPASWFGWCPDQSD
Ga0187782_105443862	F103584	GGA	MITLKKQLLSGTPDDVRRKVEDLARDQDDREYLAGTWFRELAVKLAACDGLAVSAVTSDDAAVYELEVTLAGAPHHDAIVIDRSQPGDHCQLTLERWLPISNEPGIEDAVTTIHAILAASARSDTTGTTSTTAGP
Ga0187782_105443863	F032398	N/A	TRLPEHGDAQRIAAFLASHPGWSAFWDKRDGVWRVSEDDSDSGLYAENAHADTVIDYMASHS