Scaffold Ga0187782_10122148

Overview

Basic Information

• Taxon OID: 3300017975
• Scaffold ID: Ga0187782_10122148
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1926
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F002408	Metagenome / Metatranscriptome	562	Y
F005213	Metagenome / Metatranscriptome	408	N
F025071	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187782_101221481	F002408	N/A	AAAAKADLGVLIRDIYRRQDEVFVRFSIENRSSQTLRAGPPAVVSLTGLKFDRSLWAFQNAQLGMEYASRLKTYDAPIPVKIRQCEPGVAEVGPGEARIGLIALQLPPVKPDAKKTQPTVLKILFPIDRTGNLTATLVL
Ga0187782_101221482	F001473	GGAG	MESEYQTVGQMYERLRLMIRQRNDTGFRLAATDAVFEPRNPFEPANKRRPKSVVAIILALVVILALIFLYFSFHHAR
Ga0187782_101221483	F005213	AGGGGG	MASNATKMVNETEETRSEPRPDVEFQDVLFSDLATLVCYWITIVLLAVVGAYLIRWWLIHPGCYAAPVQDPWGITTPPWLILPLPPIGVIGSLGHAAWRALRGQRTWKMLMTSASLIAVMGCSKLLETYLAPM
Ga0187782_101221484	F025071	GAGG	MIHNSEPPRREMTNGEAGVVGAVLGFGLIALLLYLAVARYHIRKEQLVEVGLYLFVIAAAVIAPVLRKFTTRGKRTKRPPFVIPARKDERAIESAWNQNAVLLGYDMDETPWL