Scaffold Ga0187777_10082800

Overview

Basic Information

• Taxon OID: 3300017974
• Scaffold ID: Ga0187777_10082800
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2092
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000996	Metagenome / Metatranscriptome	810	Y
F002143	Metagenome / Metatranscriptome	590	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187777_100828001	F002143	AGGGGG	MPPRPDPNEAIQRFLDQDPRLTRAEVLHLTLQSLRDRMEPDRVLACELAWEMHAKGYWSHIRNADGTTYATEEDYFRHVLGLASWRTAYKRLAIGRMLTRFDEPERAMLRTGLAAVGLAKATVVAPAIERLHEWGTWLRCAQELSIVLLQAKVSEALDALPRGREPAPPGEHFRRTVLAAMPDIEAMELVEHFFSLGKRVVGSPNPIAIFLAGCRECLPEWELQAANPRQATVAASPVCPTGQNSP
Ga0187777_100828003	F000996	GGAGG	MSSLKRWRQVGQGQFQKWEAPGQELEGTWQGIHDGRFGPLGTVDTGEGRLAFPLPVALRDRLGQVRHGALVLVRYTGLQTSNAGRTFKGFEVFVDESDGWDEPMTPTSLPSRKED