NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187780_10326500

Scaffold Ga0187780_10326500


Overview

Basic Information
Taxon OID3300017973 Open in IMG/M
Scaffold IDGa0187780_10326500 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1081
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006575Metagenome / Metatranscriptome370Y
F029856Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0187780_103265001F006575GGAGMTHQERAIESAVATSPYLSLRRAVRPAILAHSLLAGDQERAGKLAAECEDLLFLSGELLKAAGRARILDAGPAPAMPDAGQDNGDRPAQFLEAYTEAGLLWAKVVGSSLALAGALIDRGEWDDVGRLASFLADAGEESAAMDLRTRLGKVVWQAHREQLRGISNTMPPTAIRQAITALRAVLRDVPEEYPDRNREVNRFLAPLASAIHAIMKDEGVQIPYSSRVEHIATGGVAKYPDIVKISLDELAAEFEGLCG
Ga0187780_103265002F029856N/AGIHVVAWTDSYATAERALRRAGIGYFGLRAVLRVLSPAESDSLLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSIASLTAFAKETFRSQS
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