Scaffold Ga0187780_10089166

Overview

Basic Information

• Taxon OID: 3300017973
• Scaffold ID: Ga0187780_10089166
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2123
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F020887	Metagenome	221	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187780_100891662	F013913	GGAGG	MNLTPSAKGSFFAGIGLWCLIWAALWKADEIAELGGFQRWVNSERCLRWISKHRSTSLIGTELVNYSHTGLDPLGVTFALGGTLVNAVVIFLLLPLRDRAKRGGELLNL
Ga0187780_100891663	F054526	AGGA	MSKQQVDPSTPELIEQVISSGLFSFDDEPHFSWQGCEHCADGLGATVYDLQGYRSLEDTESFDFQVCGDCINRLYYGTEEN
Ga0187780_100891664	F020887	GGAGG	MRTKITLYGEIAGNIWMPAVECTKEFHLELTRIPRTSRTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCAITWARLEVSHYFGDETGATHTVKIRTRVWELRGQGHDADCFTEVRS