Scaffold Ga0187780_10071446

Overview

Basic Information

• Taxon OID: 3300017973
• Scaffold ID: Ga0187780_10071446
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2384
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010407	Metagenome / Metatranscriptome	304	Y
F030483	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187780_100714462	F010407	AGGAGG	MKSLIGVLMGVVVVVLVFSCATVPKEPLAPGEVRLLSMDIVGSSIEAYVSFPVRVFFEAAGKLEIKRACFYESGEEPYCFDVSDISYFTLATKRTFQVYLPGLNVGSHSVECYVEYIRDGEIRKTNVVLTQILAGTAPGH
Ga0187780_100714463	F030483	AGGAG	MKSKRSLCLFPFLILILVFSSCHARYVSDVKPAMTKEEVVSLWGKRGLVTYKTVNGRSIETWGYYFSDSDSICWVDFFQDRVVASECRSQRKGWFGYH