Basic Information | |
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Taxon OID | 3300017973 Open in IMG/M |
Scaffold ID | Ga0187780_10001285 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18934 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (70.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 3.8381 | Long. (o) | -73.3194 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002623 | Metagenome / Metatranscriptome | 542 | Y |
F008315 | Metagenome / Metatranscriptome | 335 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187780_1000128510 | F008315 | N/A | MAHLLLHPYWLTIAFATAVQLSLFLRWLYRRIRNDEIMRAFVEDMATNHLPHIYERLEKLCERQGIERSPLPPIRWIDLNSRSR |
Ga0187780_100012858 | F002623 | GAG | MQIREYTEGDLEALHRMHAQQGFDYPFPDLTDPIFISKLVVEDADGRPVMASLARLTCEMYLLADPGAGKPRDRLEHLVALHRAGERDLLARGLDDAHAWLPPRVANRFGRRLEALGWVRDDTWTPYCRRLNGSG |
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