Scaffold Ga0187781_10045816

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10045816
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3010
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022331	Metagenome / Metatranscriptome	214	Y
F026464	Metagenome / Metatranscriptome	197	Y
F037853	Metagenome / Metatranscriptome	167	Y
F039836	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_100458162	F022331	AGGAG	MQLSSIELRTLVAAQIASGLVGHVAPNSPQTSIDEVVQLAVRMAKALQNAAIKSMHEKDT
Ga0187781_100458163	F026464	AGGA	MDQHPTRQMPDDELVEIADRPQLWISRDGYVKTLRAGLVRAAHITSQGRSPYPLESPSGVRVELAQMSRLWNRLGIVQEKGLA
Ga0187781_100458164	F037853	GGA	MATSFSEAEMRALIAAQVASGLVAGLSLGPKSLDAEVAAIAETAVRIAKAIHDASVKSVQIR
Ga0187781_100458165	F039836	GAGG	MQVAVGQQWAIFSSKAQRWAVATVISVENGTVNLKYRDYRGFCHLAAVEMLRVNDDLQLLEPLGEINPHHWHG