Scaffold Ga0187781_10038406

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10038406
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3300
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F094232	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_100384066	F032938	AGGAGG	MRKFLVVSYDDDQQQWFWDYVAAKKAEDAVAHVCKRRPYVIAADAASLSQVQRIARDLQSLPIPRIIHQFDWGTATPEEEKGDNS
Ga0187781_100384067	F014894	AGGA	MRMSIGVPGISFYFEHHQVKPFLKDQSNRMKELFQERVVPGVLRGTCKVLELVANNTADAHDYLIGKLKPKRSA
Ga0187781_100384068	F094232	N/A	AGAAFWTLIWAAIHKLDEIPYLKDITSTQQVLDWIKCNKGLTLVITEGVNFLLHGLSAHGVMFTFGGTVINFLMVFGYVSGRQVLAVISQKIRRNSPALPQ