Scaffold Ga0187781_10002685

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10002685
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13475
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F038361	Metagenome / Metatranscriptome	166	Y
F044616	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_1000268513	F044616	AGGAGG	LSSKAVTVPSPTETIECPLCSGAGELSRAAILDRLGVKDFARVAQLTAEEAFRLLQNRHDREHQTAWSRFETELAKRTAEIREQHKDELRIAMSERENLSRRVDDCLRELAQLREKNQLLEGELAKVARVGKREEMTFEEDVRTWAGVWISDKLPRNGDFIVCYRAPNGEPAEPKILIDNKDKSTIAESDIDKLLRDARERSIGIAALVARDETQLRLVDRESRWSRKDGVWLLRTTRHWLPRDLDLLRPIFERMRTQGFDLLEKNAMLADELRRTFPEIDRIEKELGKAAKAIQSVSALVVRYRERLRDLCDAAASAKIDAQPHRDLHDRQTARA
Ga0187781_100026854	F000175	AGGA	VIGVMAAILAARKLAQYDGVKRVPATICAVADSIRWAEEIMEEIDRRHPTKPAQQPSAS
Ga0187781_100026855	F038361	GGAGG	VTEPTKKERAESDTVDQKSAMLTVQVLWAAHAWNATPKEAAQQVVADLFDLLARGGTVSVRVASSDGTERTLDVAVESR