Scaffold Ga0187781

Basic Information
Taxon OID	3300017972 Open in IMG/M
Scaffold ID	Ga0187781_10002183 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017972 Open in IMG/M

Scaffold ID

Ga0187781_10002183 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14981
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14981

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Colombia: Department of Meta

Coordinates

Lat. (^o)

4.0627

Long. (^o)

-73.195

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F062368	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_1000218311	F008672	AGG	MWTSYYNAGLSRQVVRQLIAVINRDMQAALDFVSGAPGSYPPFIEYDLALVPALQFPAILLTPDTVNFDEDAGSTLHQTLRLTSVIAVTHQDRNALAEIAQDYVRALRAVLDTLWESTPGDFLLTNLALPAPPFPSGALSPGLASGKLMKLFVDRHTFEEIRRGATSGFVMAATMSILVEIEET
Ga0187781_1000218313	F011724	N/A	MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARGIDPDSLALTADQANFLRALNRDGAIADLGDALEGNVSLQAGEQAHAAQRRNSFERQIAEIKQGLYDKFFSALARTVEIEPTLGGTAGGETDRSTAWDRDENKAFSKDQVF
Ga0187781_1000218314	F062368	GGAGG	MAVSVSLTEEFLEVTVAGPFIKNGKLSVTGLTTGGNNTVPHGLNDGKGNPVTPVTVSIEPTSNNNFYEYQAADATNIYVGVGSGTGTTCNIYVEY
Ga0187781_100021833	F007097	N/A	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPTPIDPDDSYAYSRAECQFVWMIYSNRSPAPGFVPGQAAPPAQANSQSGQLYNCPGAWDVNDTTGAVSLRTTYWQNGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0187781_100021835	F016487	N/A	MGHPISRSSDELMIQGNQIWTQALAQAQKQPYYTVEIPDFAIAIASFPSNANVVTTLGGYGVTLYGVGGYGT
Ga0187781_100021839	F010661	GGA	MTKLNNIATAADIRQFAEAESWTKPERLQLPKSGLAVILRRPTKFYWALRRSAWPRELCEKLDLIGVGVKPDLSVEETLLLLREDRQMLNEVFVHPKPSFEPSATQFDPSWLPKEDTDFILRYLRGQVLANGQDLESFSRGKSGPVKGSGGDGTPVCKDPEPDVVPGGGTLADR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187781_10002183

Overview

Ecosystem & Geography

Associated Families

Sequences