Scaffold Ga0187781_10000009

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10000009
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160030
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (63.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000426	Metagenome / Metatranscriptome	1154	Y
F003124	Metagenome / Metatranscriptome	506	Y
F003708	Metagenome / Metatranscriptome	473	Y
F039733	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_10000009106	F003124	GGA	MVYTGAMPTPKQVRRSVTLPSPVAQQVNRIAKRRQLSDNRVLVELIEEGIEAQQKREKAFFQLAEKFRAASDPQQVKQLGNELGRFVFGE
Ga0187781_10000009119	F003708	GGAG	MKAHVLLIVPAILLVPVSAHYPAVRGIQPPSEIAAPNSDDPSSPAFQTVIEPGLSVGPLKLGDSRERAWELFPKKYGDQEWEDRCGTTLYWVDADNRAGQGDLSIRLNKNKVFQIESSTTRFHTAEGITIFDPPEKVKTAYKGLSAYTLLTTPTPALGDRPLIFWIDKKSGIAFAFAYYPAQSKRYLYKIIVFAPNKTFCPEGEGTNSPKWQPIPPYSLEPPSDLALNRQSS
Ga0187781_10000009133	F000426	AGGGGG	MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVDDITSQADAMAAKAGANSGGAASSKPARGTAPRWP
Ga0187781_1000000993	F039733	GAGG	MKAYLANLPMRTWLLLVVPALAVAYPVVSIAIPALLRAVLPEAVRTVLSVI