Scaffold Ga0187781_10000006

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10000006
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 197104
• Total Scaffold Genes: 161
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (64.60%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000822	Metagenome / Metatranscriptome	876	Y
F005152	Metagenome / Metatranscriptome	410	Y
F008699	Metagenome / Metatranscriptome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_10000006121	F005152	N/A	MKTTLVVLFVLCAATAFGQAAGVVSGDIQALQLSGHPQRASIHEMAPEQPLVGGTAATYSYARGERPLWEFGPVSEPIPLGDVARAYRKEKLTAKKAQIIFEKQGS
Ga0187781_1000000613	F000822	AGGAG	MERRLVWLAAGILALAGAALGQGPRVFHGEVSDSQCALNVHSLTHSHQEMLKSKSMGGTSNTCAVYCVEHLGGYLVLSAGKNVFRLDRPDLVHGFEGHKVKITGTLDVKTNQIHVLKIHLEEK
Ga0187781_10000006130	F008699	GGAG	MPRFNADSITLSYSNLEAAKKWWIDAFDCKVAKVPSDWDNRLPSDVALRLPGYDEPTILLCSKAEIEEAHLDAPSPVASDIFCDNLKKAHEHLSRRGIGPGPIQDGGDLQFFEVRDVEGNLIQICKES