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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017972 Open in IMG/M |
| Scaffold ID | Ga0187781_10000002 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 266171 |
| Total Scaffold Genes | 247 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 161 (65.18%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000138 | Metagenome / Metatranscriptome | 1954 | Y |
| F000882 | Metagenome / Metatranscriptome | 849 | Y |
| F001329 | Metagenome / Metatranscriptome | 721 | Y |
| F003354 | Metagenome / Metatranscriptome | 492 | Y |
| F005270 | Metagenome / Metatranscriptome | 406 | Y |
| F005402 | Metagenome / Metatranscriptome | 402 | Y |
| F009711 | Metagenome / Metatranscriptome | 314 | Y |
| F011690 | Metagenome / Metatranscriptome | 288 | Y |
| F048471 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187781_10000002120 | F005402 | N/A | MGNVMKRLKLDRIISIATLVASLVAIVLVLKRPAPVAQPQTPAAITEHAQSFDQKMAQFEQAAQQSQASGSTDTAKPETRQAAPATTQNPKAEVRINSDEISAVLAQSLGTAGASGLTPDSDVGSGAPVIKDQQVSFDGDVVHGQFLTEVAGKDVWITISGHIGEKDGYATFDPTEFKVGDLNVPVSLINPALQKKLAEERDRLKLPNNVGDVKVEKGELVMQQK |
| Ga0187781_10000002142 | F011690 | GGAG | LRADSALDQLLHVNILHVPTSDTSRSALAIQMQAQQAMSGEQRFLLAIEMSLFARELARERVRSEHPDWPETDVVRELLRLAFLPKPLPARLQ |
| Ga0187781_10000002158 | F005270 | GGAGG | MDPEFDSAPSGEVSSEDVAVVVAALEPDQLISAKKLHHCPRRRLTVTEKFLFWFLRIYLVFMFGVVIYQIWSGAR |
| Ga0187781_10000002177 | F009711 | GGAG | MTLAIVLVIAAVLSLIVILGAAVARSLQISAGASFGSQIQPLDIEAFRKLADPAEDDYLRRRLPGSEFYRVRRARLRALAAYVRTAGRNAAVLVRVGQNALVSDDPATAQAAEQLVNQALLLRRNAALVLMRVYVAMALPNARLTGGSLLDRYNQLSTAAMLLGRLQNPAVPVRISIW |
| Ga0187781_1000000218 | F000882 | GAGG | MPQEILSVAVWKPVPDMEAASLATFRELASIVAAKGYGRDLLYRDREGHYVFLRYWKSEETRHAAQEDPDMLRCWARLGNEIQIVRVYEILTEVAMDQIK |
| Ga0187781_10000002180 | F003354 | GGA | MALKSALDDVRETTLASVSGLLGKLRYLASLRRTQGRYQHWGMEIVHGPEPAQRALKTAHAEVITEVLRAPLASLEQDLQESSQRAGIGAQAYVTGLRERFEDLLPGEWGDSPAVHHLSSVLAALSSLEKHRGRATRSIS |
| Ga0187781_10000002191 | F048471 | N/A | MKIYLSLIAFFLQVLGLPAFASDAVGRFEVYCDGVGIFLANIEGAPAPGKLVLFSYVSFPPGTIGGRYFGQGRWSDAFVHRDGCVPDGRCESIAHGKVWIDAWDTTTAADAPPPKRISGKYEIDLNGKHLEGRFVAKEHHRRHPLRVCM |
| Ga0187781_100000024 | F000138 | GGAG | MHMQLANSFRIPFTTLISYIPIIATVVTCFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERISATEAKVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWTQEMGKRILACTGHEFEGPIAACITFYASGRMFRTDWFRSQIQVREGRIASLEPSTMPTRRVRVIERKGPERRRDFVQDVTADVALDKTEAPPPPDEKFFVTGA |
| Ga0187781_1000000263 | F001329 | AGGA | MSQNHYSTKPRRRAKSGKRKDPSAATMAKLRQLAAVEAQKSGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |