Scaffold Ga0180438_10200227

Overview

Basic Information

• Taxon OID: 3300017971
• Scaffold ID: Ga0180438_10200227
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1590
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED234 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015724	Metagenome	252	Y
F071126	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180438_102002271	F071126	N/A	EKGYILCVGYLGNGPNAVSGGLSPSGVTWMAQGGFY
Ga0180438_102002272	F015724	GGTGG	VSRRKGSDHFGFHNHNPKKSSFGFEGFKGYDKKSQLSRPQPWESKFRPDFNLKDFSILFDYNYASLWTRWRRGYELYMYANQAYVGLNYSFRYFISGTVGVGTALPGACYMYPSTDQDMAMRMVAIRPRDSFNFLDFGYAIQSVTQVGTDLYAVQLNSNFGPPISFFEGEVLSDRFDANGNEKTSFNNYTVVGVGNGTTPLPPGFAPIFNSIFISTSIDNSWSVVDNETLAAPAVSLPTVGEYFTTEMRFGCNCPDYLGREDFNLYKYSLKRRYPYTLPQDLKPGTYDAGYETSPQRSQNTRDFPGFARDFGFIYVKRVLDLPVYQDNSKTYSDPNLFYYAPRWCKHIYASFWDLKNRFGDNSFASPWLSQPTDEPLDGRYREYFERSLKKSTDFENRQKNLRWWEKYSPSQNTVPVHMMYSDMMPTMIKTLNFDTLASGTTTRITASGFEMFQIDQYNPFAPIDPATLQKIDGGFYSNGVLVSGATVTYDG