Scaffold Ga0180438_10142503

Overview

Basic Information

• Taxon OID: 3300017971
• Scaffold ID: Ga0180438_10142503
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1972
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028966	Metagenome	190	N
F044811	Metagenome	154	N
F091572	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180438_101425032	F028966	AGGA	MSAYAFVNYVRFKTQAGVFTGTPYQNFSINETRTYQGVTYSFAPFAVLGGGGARGGERSSGSLVAGTDALSVNLFAEAVRNRYMLEIKTVSLDPLTFIDEALITTENWRVASYNLDVTKVVLRLTSHLDAVKAQVPRRTLSTNLVGALPTSGALVLS
Ga0180438_101425033	F044811	N/A	MWKYWIGLPHKFRANPRDGIGADCLLMVWNVLEDFDAPHPHFDHAWFDLAENGRHRLLAQLYRQLTIPLDAPEDCAVTLFSTDKTIGIAIVVDGGLLYVHHRRGVQWLPLDRCKQLEFRKFK
Ga0180438_101425034	F091572	AGGA	MLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGTELIIAAVSLAISVGATAVSLLLKPTIPQAGQAPGQPRQQQQTTDPIIRNTSFAPRFGFDSQQDIATLGSTIPIVYAKREEISGTTYGGIRINTPMVWNQILSLGIGQLLRGVFILGESNINSIDPTNFAIGSNTLSGYLFDTNSASEAGSRVAIYFSGDGGRIIGGDRVVGRIETTD