Scaffold Ga0180438_10117793

Overview

Basic Information

• Taxon OID: 3300017971
• Scaffold ID: Ga0180438_10117793
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F036016	Metagenome	171	N
F068594	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180438_101177932	F068594	AGGGGG	MKEYIFWQEVKKYVREECVIKANSLDEALEIHNDGGADYKEVHCFDEEITDEGTDEN
Ga0180438_101177933	F005373	AGGAG	MNEGLENINQIEDLEKKVLTLSSLLSQMCCHADEDTPAEYRTKHFRSTMDESYEYLEEIGYLKGDKXKNIYFGKKLKNM
Ga0180438_101177936	F036016	AGGAG	MMDIETIVAMNKEQGRKAKRNGRGPTQFEEEDIIQAEEGLLTPLKKITNLGNYIPKGWKRFNTNELKDQLGLPYDWKFLDNGGLFVDSSGFGSDNEPALSVRQCLETISKLFRIRDDLGFAICSEGQFQLTIGVYEEDK