Scaffold Ga0187783_10027844

Overview

Basic Information

• Taxon OID: 3300017970
• Scaffold ID: Ga0187783_10027844
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4187
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017451	Metagenome	240	N
F040963	Metagenome	160	Y
F061120	Metagenome / Metatranscriptome	132	Y
F075215	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187783_1002784410	F040963	N/A	AMWLMSSFNPTALEKRHHPRPPIDQTVTAEDIAHLHLQATREASAAAKDAKEDVAPVKHHKPKLIARRRNDYAYGNSWGYTEAYRNDPRGFFIH
Ga0187783_100278443	F075215	GGAGG	MSNSYALVSALIFAIVAIAHVVRLIRGWNVEIGPYNVSMNVSWVALVVAGLIAIWGFMQL
Ga0187783_100278446	F017451	AGGAG	MQREEMELLTVRATLWRMEIELLREIHRYRFAKRGRRFGSDVELMIVYGAAMFYYGFGTPVRALPIPRYLEMPRETVRRHMGRLVTLGLFERAEDLVPTKELREVEIERALRLLRNGTAGLL
Ga0187783_100278448	F061120	AGGCGG	MAKLLLLPGVVLLIADHAFAQEPTASQCLLVRQAVAQYGFAAARRYALEHYGPEAVKTGDKCFTKQAARGARSY