NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10000385

Scaffold Ga0187783_10000385


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10000385 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32373
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008704Metagenome / Metatranscriptome329Y
F016073Metagenome / Metatranscriptome250Y
F033311Metagenome177Y
F073174Metagenome / Metatranscriptome120Y
F104277Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_1000038511F033311AGGAGMRERAQAYLDQGKTVYAAGLMLRLIETEPTPENLLLLADIYAKQGLHNQSAALHLRVLKAELGK
Ga0187783_1000038512F008704AGGAGGMEFVHVFVLTQLALDKSGEVKSRNVAVTFDLFEAEDHRSERVENGYDTFVVAGDWCEDAEQSELVIAMRECREMMRQWQEKQ
Ga0187783_1000038513F104277AGGAGGLNIRTEANINQLAGDVHLLTAPIRFLFRCVLALLFLLLAPLLYSVIPFVCIAADPNSDFSMLALAYMALGPFASAFWLMMVGVVPDVYRAHKEGRVFEGNHAKGFGLMLLGFFGSLGAEALFLFYVSPIPRYTENIVANAAQWHSWFAGMGIAAFFPVILLLGWRLINWVCAGCNRCRACHENVGADNLDKLGLCHYCYDDAINEKDDDPEMESWIRTVKDEFKDRQWASELRQGRRNALKWKRRILSSR
Ga0187783_100003852F016073GAGMDDSSIAGRTEKLRREIELIQQEERLYRTRRSHSLAENAEHDKREFRVLAIREELRTLVEKAKQQSSHGSVWYS
Ga0187783_1000038526F073174GAGGMDNQNNPEILAAVPLPSAAERRRREILLARLMLFMVEIILAGEPLGLETARDLGRELRHCYPELVDECL
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