Scaffold Ga0187783_10000002

Overview

Basic Information

• Taxon OID: 3300017970
• Scaffold ID: Ga0187783_10000002
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 413138
• Total Scaffold Genes: 365
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 290 (79.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F000236	Metagenome / Metatranscriptome	1499	Y
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187783_10000002288	F002623	N/A	MRVRLYAERDLAALKRMHELQDFEYPFPGIADPIFVSKLVVEDDEGCAVMASLARLTCEMYLLLDPKAGTPQQRYARLLALHNAGETDLLARGLEDAHAWLPPEIAKRFGRRLTTLGWIRDDKWTPYCRRLQSEQR
Ga0187783_10000002297	F001450	AGG	VSPLFLFARSRPELIRVTREIHEAPPEVRTRVADAGGLNRLGGPNFRVVWGGARLTLIGGLWTDRDEHGNMIRESVELREVPKYLPLDRWHVERWVPPEVYGSPEEWYRQTAEVGKGIRCLALGPYPSRGEYEHCFTLQTAEGEFISLTPSTCDWVVRAIQWARRQNREATRGALAQRESIRERNWDRAVSDALDESGRAFGGQPFVTNAGPLPLSV
Ga0187783_10000002334	F000169	AGGAGG	MAKKSGLKKAAENIGAAVGRADRTAHKVARAGRVAKSELAAISKQVEALKKQLQKTTRRLKHALN
Ga0187783_1000000268	F000236	GGA	MEKKIFWGTFLLLGLIADLFLPFWWGVIATVPIGMFSWWLAFRSDWF