Scaffold Ga0181585_10383998

Overview

Basic Information

• Taxon OID: 3300017969
• Scaffold ID: Ga0181585_10383998
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 961
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008977	Metagenome / Metatranscriptome	325	Y
F035485	Metagenome / Metatranscriptome	172	Y
F097151	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181585_103839981	F097151	N/A	MKKKIKVQKIDLSQFMLDKDDEKQLKSLDKLSPLSENYKNNKRVNLEYFNEDELDDVAVDDYSDCVGREDVETLGDIGMDVY
Ga0181585_103839982	F008977	N/A	MEQKEQNEQIIKVLSFILSKLDTLEIEQSKHKEMFYKVRKNLTDANDLINQILDVLEIENPELYNKTMEQYQNGHVKDLVSTLDKHIAELDDLSDDEVLDLLTQIVGES
Ga0181585_103839983	F035485	AGGAG	MNGDMIIFLEDLKALLLEIDTHHEEDQNEILIEVIDLIDDKIIELES