Scaffold Ga0181587_10299184

Overview

Basic Information

• Taxon OID: 3300017968
• Scaffold ID: Ga0181587_10299184
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → unclassified SAR116 cluster → SAR116 cluster bacterium MED-G04 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056320	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181587_102991842	F056320	GAGG	MSLANVKIRPFKEVEGDLAKIIGLYSKAELSEKDRYFIASLFYAKVRSHISKPPPGVVVKGKQRDAQIDKLEAAVKKLKLAIIDLDPKAKSYFSTTFRVNENEEKEIWPNELLDSWVLEISKFRAATSALPRSGASPVGLALARACFKTFTEQMKMPPPKGISSGTKFAKFGQDCASVLFTDELDFVSA