Basic Information | |
---|---|
Taxon OID | 3300017968 Open in IMG/M |
Scaffold ID | Ga0181587_10086013 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2276 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013895 | Metagenome / Metatranscriptome | 267 | Y |
F039180 | Metagenome | 164 | N |
F063758 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181587_100860132 | F013895 | AGG | MQIQKNNFVVTLKTEKEITEYFGSHIPEEQRLLWLGFFIAHNHIAHKLEEMDAQKN |
Ga0181587_100860133 | F063758 | GGAGG | MPKRIKHNDLLPWFTQDHGTLPKAYLKSCQKFFDEIQAPSLKQQATSLPQSGDTVVTTKGKL |
Ga0181587_100860137 | F039180 | N/A | DLLKINVEHQNLNADLRKDIKYLQERSQFYEEQCEQLKKENRELRNMGKNFIDEHRNKGD |
⦗Top⦘ |