NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181587_10022735

Scaffold Ga0181587_10022735


Overview

Basic Information
Taxon OID3300017968 Open in IMG/M
Scaffold IDGa0181587_10022735 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4803
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009502Metagenome317Y
F063484Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0181587_1002273513F063484AGGAGMATGAEVFIKNLTQELDELAVKYNKTKDPGLRDQWFKKVSQVPPLSALEEARLPSRKKTLGKAQTFQSD
Ga0181587_100227356F009502AGGAGGMAVEVKKEEYEDIYDCIVSDQVPSNEMAEYLEDKGFYKYYIKRRALGSLWKRKDDF

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