Scaffold Ga0181590_10301643

Overview

Basic Information

• Taxon OID: 3300017967
• Scaffold ID: Ga0181590_10301643
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_103016432	F032639	N/A	MKKQLINEDGFYAGSELKWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMESIDEAIVDTIEYMIEEGQLKTEKL
Ga0181590_103016433	F009699	N/A	MMTDKEAQAFMQKVDSSAPFWVELHDEERPTIQIQGSTVPRCLYNLMVTRRDVNLYLKGIKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFNEQNNEETTD
Ga0181590_103016434	F020115	N/A	MTHEQFEIFRQWADRVANTANDTDTHIRPIDIIHDIAGILANHEPFLPRL
Ga0181590_103016435	F025729	N/A	MNKAILDRLVYCEETYAGESETWQDPVTGDYYSVPIEIVRDWDNAMNLNDPN