Scaffold Ga0181590_10077902

Overview

Basic Information

• Taxon OID: 3300017967
• Scaffold ID: Ga0181590_10077902
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2613
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019474	Metagenome	229	Y
F035746	Metagenome	171	N
F046366	Metagenome / Metatranscriptome	151	N
F073495	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_100779021	F073495	AGGA	MNNQHWHFMGTQTLTEYDFDLRYCFADDLLRFDNLTVDGDEMHDEDLTSRQFAEIIGHLKEYRYELL
Ga0181590_100779024	F019474	GGAGG	MTIEFEVETYKIPAFALSALVNNDYTGIIDDDEAFVDNLCEWLDGEYGTGNWHIGDVSEQYFGRSDFGGLVGEVCDVEVVYKLVEME
Ga0181590_100779025	F046366	GAGG	MNSATQTVIMHISNDQDYYNDVQEIFERCGDSYDTCIELKEMVDNIMFPEADIQAQNMDLFFRQDIIMDALSQVNWREVYESLVEVV
Ga0181590_100779026	F035746	GAGG	MKQHKHDFDKLRHVATKYYRETNCCTVIAVAAAANVGFGKAYHAMKREGRRDRRGAYFTQYKRALAGLGYDVVPIDINMGKTLAAAKKRCPKKGTFLLNTRGHVTCIRDGEMVDWAAENNSRKRILFINQVIKRED