Scaffold Ga0181590_10045895

Overview

Basic Information

• Taxon OID: 3300017967
• Scaffold ID: Ga0181590_10045895
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3499
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018089	Metagenome	237	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_100458951	F018089	AGGA	MTNTTQQTTFEIKNPEAKASYGMVRKIAQQFSKSPKCPKDIKWGTIHGHFVSRLNDKKNPLTQGQVAKILARKTLYTTDLEQMRAYKKLVSLG
Ga0181590_100458952	F030892	AGGA	MENLMEICSETRMERLLNPQMSDHYYTHFHGKYGYRPYEVKVGRKWVTMRNPSHKVRMPLAKYKVHAFLQWRRDAMTDASCKQYKITGKYSRPRAWWKDYGFTSNPKDFDYEPSRLAW
Ga0181590_100458955	F031659	GGAG	MKTPCKNPNGLQNMATIVDSKTRKAVKFNSLDKAKEHLKSKGYRFRQAFSFKEDRSMIYQGRFGWVKIYSSKDYLNKTTMEQGTVWNIVKI