Scaffold Ga0181590_10027900

Overview

Basic Information

• Taxon OID: 3300017967
• Scaffold ID: Ga0181590_10027900
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4554
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019967	Metagenome	226	N
F064509	Metagenome	128	N
F097237	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_1002790010	F097237	AGGAGG	MSDGNAKQKDWVLFPYNPTDERAIKIDFSGNVILDNGKKGTILGTKGVSKDGKTKFVRIFAQVGVVFKGDDKFTGEM
Ga0181590_100279003	F064509	AGGA	MTDKTNIYGDYRICCKCEMKADVVENGNDLCASCYFKHHTNTTLEEYEKTNKEIDIERERKKNKK
Ga0181590_100279006	F019967	AGGAG	MIKVELKPIDVELALDTANKRFIGNLKMGKGFSYGYKGDYRKQIADSFLGALAETCYAKAFNKYYNGSYSDNLERYTDSDFQNNIEIRAQEKKDYNFLLIRPGEKKGKYILVIHEGDFEFSILGWFPYTSDESMQHRLTNFGYTHRPAVYKVDIKELYNMNDL