Scaffold Ga0181590_10022200

Overview

Basic Information

• Taxon OID: 3300017967
• Scaffold ID: Ga0181590_10022200
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5133
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N
F069855	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181590_100222001	F010532	AGGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLTKSYDGIGMEQEALKQA
Ga0181590_1002220012	F069855	GAGG	MGMKQVIELHSEGGYVIKNKFVEDKTEAKKPSKNQRRKLLRGYYSREKHSQLISSIMHGKFYNRKANNKKGILPSQMGAIRKSIYKLNPETLAHMIREQEKAIRV
Ga0181590_100222002	F046985	AGGAGG	MIVDTKEELNEWWLEEFGVDVDASKYVEVRVPAKTYAMLVHIGVFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFARGYLQQADKIWRNILQHLRAFNPVYAEELKNKLFKRRVA
Ga0181590_100222004	F032867	AGGAG	MDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDENLD