NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187776_10103330

Scaffold Ga0187776_10103330


Overview

Basic Information
Taxon OID3300017966 Open in IMG/M
Scaffold IDGa0187776_10103330 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1701
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011066Metagenome / Metatranscriptome295Y
F056379Metagenome / Metatranscriptome137Y
F079370Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0187776_101033301F079370GGAMGGFVADETRDPAADAADIDAARERMIAFVASCTEQEWRAAPLDGDPRPVAVAVDH
Ga0187776_101033305F011066GGAGGMTFTDDVQRYADAIMAMIKEDQDTGQVPRNVCSWDELDESVDAADYYRQARMPAGTRNVAKLRSAVNDEVGRRLAKAVSGR
Ga0187776_101033306F056379GAGGMPSRSRLPRGALAAVGLAVLVVAGIAGYLGFGYSPWVAVATTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.